Moisture or poorly mixed material
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Those are going to generally speaking be the first, and most likely suspects. Down the list but right there on the list is the PREP and application of PRIMER. So many variables here........consistency of the substrate condition (bond and porosity) is controlled by cleaning/scouring, shotblasting, sanding, abrading, vacuuming. ANY contaminate on that slab, like for instance if someone spilt a cup of coffee on the slab/ply it would affect how the primer and self-leveling set up. Frequently, the existing slab has all kinds of floor patch, glue and whatnot that needs to be properly removed or encapsulated.
Keep going on the list? Water quality in the batching, Water quantity in the mix, consistent mixing time and RPM, temperature, humidity, ventillation..........
.so many variables!
Those aren't great photos and we can't see the rest of the work and how this contrasts. I've alway's found it difficult to capture this sort of thing on film (digital). Sure looks like a crack to me.
It's not rocket science. It's floor(covering) science. I would want some sort of stain/color/texture planned from the getgo to conceal or absorb expected inconsistencies in the finish. Certainly some surface treatment could be applied to blend over that small glitch.